Research workbench
Catechol 2,3-dioxygenase (C23O64) from diaphorobacter sp DS2
Analyse Catechol 2,3-dioxygenase (C23O64) from diaphorobacter sp DS2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZSZ
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catechol 2,3-dioxygenase, extradiol ring cleavage protein
- EC
- 1.13.11.2
- Ligands
- CA, FE
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catechol 2,3-dioxygenase, extradiol ring cleavage protein (EC 1.13.11.2) | protein | 293 | 17% helix, 40% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.55 | 0.85 | 20 | empty |
| 2 | 90 | 0.44 | 0.79 | 18 | empty |
Compared structures
- 5ZSZ · Catechol 2,3-dioxygenase (C23O64) from Diaphorobacter sp DS2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ZSZ · PDBe 5ZSZ
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