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Solution structure of the N-terminal domain of the yeast RPN5

Analyse Solution structure of the N-terminal domain of the yeast RPN5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ZMR
Type: protein
Length: 136 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 26S proteasome regulatory subunit RPN5
UniProt: Q12250
Pockets: 1 · best druggability 0.32

Structure

solution nmr · 1 distinct chain · 60% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	26S proteasome regulatory subunit RPN5	protein	136	60% helix, 0% strand	Q12250

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.32	0.77	11	empty

Compared structures

5ZMR · Solution Structure of the N-terminal Domain of the Yeast Rpn5 · the same entry in another collection · chain A against A, TM-score 1.00
Q12250 · AlphaFold monomer V2.0 prediction for 26S proteasome regulatory subunit RPN5 (Q12250) · a predicted model of the same protein · chain A against A, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12250
Elsewhere: RCSB PDB 5ZMR · PDBe 5ZMR · UniProt Q12250

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