Research workbench
Crystal structure of voltage-gated sodium channel navab E32Q mutant
Analyse Crystal structure of voltage-gated sodium channel navab E32Q mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YUB
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ion transport protein
- UniProt
- A0A239WB15
- Ligands
- 1N7, CA
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ion transport protein | protein | 229 | 84% helix, 0% strand | A0A239WB15 |
Ligands and binding sites
- 1N7 · Chapso · ligand · chains A
- CA · Calcium ion · metal
- LMT · Dodecyl-beta-D-maltoside · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.44 | 0.78 | 18 | empty |
| 2 | 85 | 0.37 | 0.76 | 16 | empty |
Compared structures
- 5YUB · Crystal structure of voltage-gated sodium channel NavAb E32Q mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A239WB15
- Elsewhere: RCSB PDB 5YUB · PDBe 5YUB · UniProt A0A239WB15
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