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Crystal structure of flavodoxin with engineered disulfide bond N14C- C93

Analyse Crystal structure of flavodoxin with engineered disulfide bond N14C- C93 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YOG
Type: protein
Length: 148 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavodoxin
UniProt: P00323
Ligands: FMN, SO4
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flavodoxin	protein	148	34% helix, 25% strand	P00323

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	90	0.42	0.79	23	FMN

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5YOG · Crystal Structure of flavodoxin with engineered disulfide bond N14C-C93 · the same entry in another collection · chain A against A, TM-score 1.00
P00323 · AlphaFold monomer V2.0 prediction for flavodoxin (P00323) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00323
Elsewhere: RCSB PDB 5YOG · PDBe 5YOG · UniProt P00323

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