Research workbench
Crystal structure of the dutpase of white spot syndrome virus in complex with DU,PPI and MG2+
Analyse Crystal structure of the dutpase of white spot syndrome virus in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y5P
- Type
- protein
- Length
- 980 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q77J78
- Ligands
- DUR, POP, MG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 170 | — | Q77J78 |
| B, F | — | protein | 167 | — | Q77J78 |
| C | — | protein | 149 | — | Q77J78 |
| D | — | protein | 171 | — | Q77J78 |
| E | — | protein | 156 | — | Q77J78 |
Ligands and binding sites
- DUR · 2'-deoxyuridine · ligand · 6 copies · chains A, B, C, D, E, F
- POP · Pyrophosphate 2- · ligand · 5 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y5P · Crystal structure of the dUTPase of white spot syndrome virus in complex with dU,PPi and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77J78
- Elsewhere: RCSB PDB 5Y5P · PDBe 5Y5P · UniProt Q77J78
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