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Solution structure of SKP1 from homo sapiens

Analyse Solution structure of SKP1 from homo sapiens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5XYL
Type: protein
Length: 163 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: S-phase kinase-associated protein 1
UniProt: P63208
Pockets: 2 · best druggability 0.50

Structure

solution nmr · 1 distinct chain · 40% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	S-phase kinase-associated protein 1	protein	163	40% helix, 7% strand	P63208

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	283	0.50	0.74	22	empty
2	131	0.39	0.74	23	empty

Compared structures

5XYL · Solution Structure of Skp1 from Homo sapiens · the same entry in another collection · chain A against A, TM-score 1.00
P63208 · AlphaFold monomer V2.0 prediction for S-phase kinase-associated protein 1 (P63208) · a predicted model of the same protein · chain A against A, TM-score 0.66

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63208
Elsewhere: RCSB PDB 5XYL · PDBe 5XYL · UniProt P63208

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