Research workbench
Crystal structure of microcystis aeruginosa pcc 7806 aspartate racemase in complex with citrate
Analyse Crystal structure of microcystis aeruginosa pcc 7806 aspartate racemase in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WXX
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mcyf
- UniProt
- Q9RNB4
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mcyf | protein | 227 | 57% helix, 14% strand | Q9RNB4 |
Ligands and binding sites
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.37 | 0.76 | 19 | empty |
| 2 | 90 | 0.35 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 5WXX · Crystal structure of Microcystis aeruginosa PCC 7806 aspartate racemase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RNB4
- Elsewhere: RCSB PDB 5WXX · PDBe 5WXX · UniProt Q9RNB4
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