Research workbench
Crystal structure of alicyclobacillus acidoterrestris C2C1 in complex with single-guide RNA at 3.1 ångström resolution
Analyse Crystal structure of alicyclobacillus acidoterrestris C2C1 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WQE
- Type
- protein + RNA
- Length
- 1,070 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CRISPR-associated endonuclease C2C1; RNA (60-mer)
- EC
- 3.1.-.-
- UniProt
- T0D7A2
- Pockets
- 17 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CRISPR-associated endonuclease C2C1 (EC 3.1.-.-) | protein | 1011 | 43% helix, 18% strand | T0D7A2 |
| B | RNA (60-mer) | rna | 59 | — | — |
Pockets
17 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 942 | 0.80 | 0.82 | 83 | empty |
| 2 | 543 | 0.73 | 0.81 | 52 | empty |
| 3 | 988 | 0.73 | 0.77 | 56 | empty |
| 4 | 610 | 0.69 | 0.78 | 54 | empty |
| 5 | 528 | 0.67 | 0.78 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 3731 Ų buried · 75 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 19 modified (engineered).
Compared structures
- 5WQE · Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide… · the same entry in another collection · chain A against A, TM-score 1.00
- T0D7A2 · AlphaFold monomer V2.0 prediction for CRISPR-associated endonuclease CAS12B (T0D7A2) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T0D7A2
- Elsewhere: RCSB PDB 5WQE · PDBe 5WQE · UniProt T0D7A2
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