Research workbench
Crystal structure of the arabidopsis thaliana raptor in complex with the tos peptide of human S6K1
Analyse Crystal structure of the arabidopsis thaliana raptor in complex with the tos… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WBK
- Type
- protein
- Length
- 1,061 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory-associated protein of tor 1; Ribosomal protein S6 kinase beta-1
- EC
- 2.7.11.1
- UniProt
- Q93YQ1, P23443
- Pockets
- 13 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory-associated protein of tor 1 | protein | 1053 | 39% helix, 19% strand | Q93YQ1 |
| T | Ribosomal protein S6 kinase beta-1 (EC 2.7.11.1) | protein | 8 | 0% helix, 0% strand | P23443 |
Pockets
13 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 853 | 0.84 | 0.86 | 78 | empty |
| 2 | 204 | 0.70 | 0.87 | 30 | empty |
| 3 | 185 | 0.62 | 0.84 | 19 | empty |
| 4 | 259 | 0.62 | 0.81 | 35 | empty |
| 5 | 395 | 0.62 | 0.77 | 57 | empty |
Interfaces
1 interface between chains.
- A–T · 626 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5WBK · Crystal structure of the arabidopsis thaliana Raptor in complex with the TOS peptide of… · the same entry in another collection · chain A against A, TM-score 1.00
- Q93YQ1 · AlphaFold monomer V2.0 prediction for regulatory-associated protein of tor 1 (Q93YQ1) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P23443 · AlphaFold monomer V2.0 prediction for ribosomal protein S6 kinase beta-1 (P23443) · a predicted model of the same protein · chain T against A, TM-score 0.42
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93YQ1
- Every structure of UniProt P23443
- Elsewhere: RCSB PDB 5WBK · PDBe 5WBK · UniProt Q93YQ1 · UniProt P23443
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