Research workbench
Crystal structure of the arabidopsis thaliana raptor in complex with the tos peptide of human 4EBP1
Analyse Crystal structure of the arabidopsis thaliana raptor in complex with the tos… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WBJ
- Type
- protein
- Length
- 1,066 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory-associated protein of tor 1; Eukaryotic translation initiation factor…
- UniProt
- Q93YQ1, Q13541
- Pockets
- 13 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory-associated protein of tor 1 | protein | 1058 | 39% helix, 19% strand | Q93YQ1 |
| T | Eukaryotic translation initiation factor 4E-binding protein 1 | protein | 8 | 0% helix, 0% strand | Q13541 |
Pockets
13 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 861 | 0.85 | 0.87 | 73 | empty |
| 2 | 142 | 0.75 | 0.93 | 22 | empty |
| 3 | 316 | 0.64 | 0.80 | 26 | empty |
| 4 | 318 | 0.63 | 0.80 | 31 | empty |
| 5 | 416 | 0.62 | 0.77 | 64 | empty |
Interfaces
1 interface between chains.
- A–T · 685 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5WBJ · Crystal structure of the arabidopsis thaliana Raptor in complex with the TOS peptide of… · the same entry in another collection · chain A against A, TM-score 1.00
- Q93YQ1 · AlphaFold monomer V2.0 prediction for regulatory-associated protein of tor 1 (Q93YQ1) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q13541 · AlphaFold monomer V2.0 prediction for eukaryotic translation initiation factor 4E-binding… · a predicted model of the same protein · chain T against A, TM-score 0.49
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93YQ1
- Every structure of UniProt Q13541
- Elsewhere: RCSB PDB 5WBJ · PDBe 5WBJ · UniProt Q93YQ1 · UniProt Q13541
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