Research workbench
Crystal structure of oxac in complex with sinefungin and meleagrin
Analyse Crystal structure of oxac in complex with sinefungin and meleagrin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W7S
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxac
- UniProt
- A0A1B2TT09
- Ligands
- 9Z1, SFG
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxac | protein | 394 | 51% helix, 15% strand | A0A1B2TT09 |
Ligands and binding sites
- 9Z1 · (3e,7ar,12as)-6-hydroxy-3-[(1H-imidazol-4-yl) methylidene]-12-methoxy-7A-(2-methylbut-3-en-2-yl)-7A, 12-dihydro-1H,5H-imidazo[1',2':1,2]pyrido[2,3-b]indole-2,5(3H)-dione · ligand · chains A
- SFG · Sinefungin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 735 | 0.82 | 0.85 | 77 | 9Z1, SFG |
Compared structures
- 5W7S · Crystal structure of OxaC in complex with sinefungin and meleagrin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1B2TT09
- Elsewhere: RCSB PDB 5W7S · PDBe 5W7S · UniProt A0A1B2TT09
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