Research workbench
Crystal structure of the F36A mutant of HSNUDT16
Analyse Crystal structure of the F36A mutant of HSNUDT16 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VY2
- Type
- protein
- Length
- 357 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U8 snorna-decapping enzyme
- EC
- 3.6.1.62, 3.6.1.64
- UniProt
- Q96DE0
- Ligands
- NA
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U8 snorna-decapping enzyme (EC 3.6.1.62, 3.6.1.64) | protein | 179 | 30% helix, 34% strand | Q96DE0 |
| B | U8 snorna-decapping enzyme (EC 3.6.1.62, 3.6.1.64) | protein | 178 | 30% helix, 34% strand | Q96DE0 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.71 | 0.98 | 21 | empty |
| 2 | 181 | 0.58 | 0.81 | 29 | empty |
| 3 | 224 | 0.53 | 0.77 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 1278 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96DE0
- Elsewhere: RCSB PDB 5VY2 · PDBe 5VY2 · UniProt Q96DE0
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