Research workbench
Crystal structure analysis of human clybl in complex with free coash
Analyse Crystal structure analysis of human clybl in complex with free coash in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VXC
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Citrate lyase subunit beta-like protein, mitochondrial
- UniProt
- Q8N0X4
- Ligands
- COA, MG
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Citrate lyase subunit beta-like protein, mitochondrial | protein | 301 | 51% helix, 16% strand | Q8N0X4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.44 | 0.77 | 20 | MG |
| 2 | 138 | 0.40 | 0.74 | 20 | empty |
| 3 | 99 | 0.35 | 0.74 | 22 | empty |
Compared structures
- 5VXC · Crystal Structure Analysis of human CLYBL in complex with free CoASH · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N0X4 · AlphaFold monomer V2.0 prediction for citramalyl-CoA lyase, mitochondrial (Q8N0X4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N0X4
- Elsewhere: RCSB PDB 5VXC · PDBe 5VXC · UniProt Q8N0X4
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