Research workbench
Crystal structure of glycerophosphoryl diester phosphodiesterase domain of uncharacterized protein RV2277C from mycobacterium tuberculosis
Analyse Crystal structure of glycerophosphoryl diester phosphodiesterase domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VUG
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein RV2277C
- UniProt
- P9WLF1
- Ligands
- CA
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein RV2277C | protein | 268 | 33% helix, 22% strand | P9WLF1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.35 | 0.74 | 17 | GOL |
Modifications
Observed in the structure: 6 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 5VUG · Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WLF1 · AlphaFold monomer V2.0 prediction for uncharacterized protein RV2277C (P9WLF1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WLF1
- Elsewhere: RCSB PDB 5VUG · PDBe 5VUG · UniProt P9WLF1
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