Lignin peroxidase (isozyme H2) pi 4.15

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 6% strand (DSSP).

Ligands and binding sites

• HEM · Protoporphyrin IX containing Fe · ligand · chains A
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
• MAN · alpha-D-mannopyranose · sugar · chains A
• A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
• CA · Calcium ion · metal · 2 copies · chains A
• OH · Hydroxide ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 4 disulfide, 4 glycan (disulfide, O-glycosylation, N-glycosylation, glycosylation).

Compared structures

• 1LLP · Lignin peroxidase (isozyme H2) pi 4.15 · the same entry in another collection · chain A against A, TM-score 1.00
• P49012 · AlphaFold monomer V2.0 prediction for ligninase LG2 (P49012) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P49012
• Elsewhere: RCSB PDB 1LLP · PDBe 1LLP · UniProt P49012