Research workbench
X-ray structure of bacteriophage SF6 tail adaptor protein GP7
Analyse X-ray structure of bacteriophage SF6 tail adaptor protein GP7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VGT
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 7 protein
- UniProt
- Q716G8
- Ligands
- CA, MG
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 7 protein | protein | 124 | 55% helix, 2% strand | Q716G8 |
| B | Gene 7 protein | protein | 113 | 60% helix, 2% strand | Q716G8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.37 | 0.78 | 20 | CA |
Interfaces
1 interface between chains.
- A–B · 383 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5VGT · X-ray structure of bacteriophage Sf6 tail adaptor protein gp7 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716G8
- Elsewhere: RCSB PDB 5VGT · PDBe 5VGT · UniProt Q716G8
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