Research workbench
Crystal structure of fosfomycin resistance protein FOSA3
Analyse Crystal structure of fosfomycin resistance protein FOSA3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VB0
- Type
- protein
- Length
- 1,091 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fosfomycin resistance protein FOSA3
- UniProt
- D7UQM0
- Ligands
- MN, NI
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 5 distinct chains · 26% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | Fosfomycin resistance protein FOSA3 | protein | 139 | 26% helix, 37% strand | D7UQM0 |
| B, E | Fosfomycin resistance protein FOSA3 | protein | 133 | 27% helix, 38% strand | D7UQM0 |
| C | Fosfomycin resistance protein FOSA3 | protein | 143 | 24% helix, 34% strand | D7UQM0 |
| D, G | Fosfomycin resistance protein FOSA3 | protein | 132 | 27% helix, 38% strand | D7UQM0 |
| H | Fosfomycin resistance protein FOSA3 | protein | 140 | 25% helix, 36% strand | D7UQM0 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 8 copies · chains A, B, C, D, E, F, G, H
- NI · Nickel (II) ion · metal · 6 copies · chains A, F, D, C, H, B, G, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.85 | 0.89 | 111 | empty |
| 2 | 294 | 0.78 | 0.90 | 53 | empty |
| 3 | 259 | 0.70 | 0.86 | 23 | empty |
| 4 | 294 | 0.69 | 0.84 | 25 | empty |
| 5 | 149 | 0.68 | 0.89 | 34 | empty |
Interfaces
22 interfaces between chains.
- A–B · 2864 Ų buried · 55 hydrogen bonds · protein-protein
- G–H · 2856 Ų buried · 56 hydrogen bonds · protein-protein
- E–F · 2811 Ų buried · 55 hydrogen bonds · protein-protein
- C–D · 2788 Ų buried · 53 hydrogen bonds · protein-protein
- A–C · 447 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5VB0 · Crystal structure of fosfomycin resistance protein FosA3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D7UQM0
- Elsewhere: RCSB PDB 5VB0 · PDBe 5VB0 · UniProt D7UQM0
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