Research workbench
Structural insights into il-1 alpha recognition by a naphthyl-modified aptamer that mimics il-1RI domain III
Analyse Structural insights into il-1 alpha recognition by a naphthyl-modified aptamer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UC6
- Type
- protein + DNA
- Length
- 173 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01583
- Ligands
- MG, NA, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 151 | — | P01583 |
| B | — | dna | 22 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A
- NA · Sodium ion · metal · chains A, B
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UC6 · Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that… · the same entry in another collection · chain A against A, TM-score 1.00
- P01583 · AlphaFold monomer V2.0 prediction for interleukin-1 alpha (P01583) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01583
- Elsewhere: RCSB PDB 5UC6 · PDBe 5UC6 · UniProt P01583
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