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Human RNA pseudouridylate synthase domain containing 4

Analyse Human RNA pseudouridylate synthase domain containing 4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5UBA
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA pseudouridylate synthase domain-containing protein 4
UniProt: Q96CM3
Ligands: CA, CL, UNX
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA pseudouridylate synthase domain-containing protein 4	protein	261	27% helix, 28% strand	Q96CM3

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · 3 copies · chains A
UNX · Unknown atom or ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	197	0.64	0.84	30	CL

Compared structures

5UBA · Human RNA Pseudouridylate Synthase Domain Containing 4 · the same entry in another collection · chain A against A, TM-score 1.00
Q96CM3 · AlphaFold monomer V2.0 prediction for mitochondrial RNA pseudouridine synthase RPUSD4… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96CM3
Elsewhere: RCSB PDB 5UBA · PDBe 5UBA · UniProt Q96CM3

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