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Crystal structure of YPT31, a rab family GTPase from candida albicans, in complex with GDP and ZN(II)
Analyse Crystal structure of YPT31, a rab family GTPase from candida albicans, in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UB8
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Likely rab family GTP-binding protein
- UniProt
- Q59KX4
- Ligands
- GDP, ZN
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Likely rab family GTP-binding protein | protein | 174 | 37% helix, 26% strand | Q59KX4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.35 | 0.75 | 22 | GDP, ZN |
Compared structures
- 5UB8 · Crystal structure of YPT31, a Rab family GTPase from Candida albicans, in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59KX4
- Elsewhere: RCSB PDB 5UB8 · PDBe 5UB8 · UniProt Q59KX4
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