Research workbench
The structure of staphylococcal enterotoxin-like X (selx), a unique superantigen
Analyse The structure of staphylococcal enterotoxin-like X (selx), a unique superantigen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5U75
- Type
- protein
- Length
- 144 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Enterotoxin-like toxin X
- UniProt
- G0Z026
- Ligands
- NDG, GAL, SIA, FUC
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Enterotoxin-like toxin X | protein | 144 | 22% helix, 37% strand | G0Z026 |
Ligands and binding sites
- NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.44 | 0.80 | 17 | empty |
Compared structures
- 5U75 · The structure of Staphylococcal Enterotoxin-like X (SElX), a Unique Superantigen · the same entry in another collection · chain A against A, TM-score 1.00
- G0Z026 · AlphaFold monomer V2.0 prediction for enterotoxin-like toxin X (G0Z026) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0Z026
- Elsewhere: RCSB PDB 5U75 · PDBe 5U75 · UniProt G0Z026
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