Research workbench
Acc oxidase complex with substrate 1-aminocyclopropane-1-carboxylic acid
Analyse Acc oxidase complex with substrate 1-aminocyclopropane-1-carboxylic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5TCV
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1-aminocyclopropane-1-carboxylate oxidase 1
- EC
- 1.14.17.4
- UniProt
- Q08506
- Ligands
- 1AC, NI
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4) | protein | 299 | 40% helix, 20% strand | Q08506 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.62 | 0.76 | 45 | NI, 1AC |
Compared structures
- 5TCV · ACC oxidase complex with substrate 1-aminocyclopropane-1-carboxylic acid · the same entry in another collection · chain A against A, TM-score 1.00
- Q08506 · AlphaFold monomer V2.0 prediction for 1-aminocyclopropane-1-carboxylate oxidase 1 (Q08506) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08506
- Elsewhere: RCSB PDB 5TCV · PDBe 5TCV · UniProt Q08506
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