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Crystal structure of murine MHC-I H-2DD in complex with murine BETA2- microglobulin and a variant of peptide (PT9) of HIV GP120 mn isolate (igpgrafyt)

Analyse Crystal structure of murine MHC-I H-2DD in complex with murine BETA2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T7G
Type: protein
Length: 762 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01900, P01887

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	273	—	P01900
B, D	—	protein	99	—	P01887
P, Q	—	protein	9	—	—

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 12 copies · chains A, B, D, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5T7G · Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a… · the same entry in another collection · chain Q against Q, TM-score 1.00
P01900 · AlphaFold monomer V2.0 prediction for H-2 class I histocompatibility antigen, D-D alpha… · a predicted model of the same protein · chain A against A, TM-score 0.99
P01887 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P01887) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01900
Every structure of UniProt P01887
Elsewhere: RCSB PDB 5T7G · PDBe 5T7G · UniProt P01900 · UniProt P01887

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