Research workbench
[3]CATENANE from MCCJ25 G12R/I13C/G21C lasso peptide
Analyse [3]CATENANE from MCCJ25 G12R/I13C/G21C lasso peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5T56
- Type
- protein
- Length
- 42 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Microcin J25
- UniProt
- Q9X2V7
Structure
solution nmr · 2 distinct chains · 0% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Microcin J25 | protein | 12 | 0% helix, 25% strand | Q9X2V7 |
| B, D | Microcin J25 | protein | 9 | 0% helix, 22% strand | Q9X2V7 |
Interfaces
5 interfaces between chains.
- A–B · 426 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 408 Ų buried · 13 hydrogen bonds · protein-protein
- B–D · 245 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 133 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 130 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- Q9X2V7 · AlphaFold monomer V2.0 prediction for microcin J25 (Q9X2V7) · a predicted model of the same protein · chain B against A, TM-score 0.43
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X2V7
- Elsewhere: RCSB PDB 5T56 · PDBe 5T56 · UniProt Q9X2V7
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