AlphaFold monomer V2.0 prediction for microcin J25 (Q9X2V7)

Structure

1 distinct chain · 10% helix, 0% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 6N60 · Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA… · an experimental structure of the same protein · chain A against M, TM-score 0.17
• 6N60 · Escherichia COLI RNA polymerase SIGMA70-holoenzyme bound to upstream fork promoter DNA… · an experimental structure of the same protein · chain A against M, TM-score 0.17
• 4CU4 · FhuA from E. coli in complex with the lasso peptide microcin J25 (MccJ25) · an experimental structure of the same protein · chain A against B, TM-score 0.16
• 4CU4 · Fhua from E. COLI in complex with the lasso peptide microcin J25 (MCCJ25) · an experimental structure of the same protein · chain A against B, TM-score 0.16
• 2MMT · Lasso peptide-based integrin inhibitor: Microcin J25 variant with RGDF substitution of… · an experimental structure of the same protein · chain A against A, TM-score 0.15
• 2MMT · Lasso peptide-based integrin inhibitor: microcin J25 variant with rgdf substitution of… · an experimental structure of the same protein · chain A against A, TM-score 0.15
• 1S7P · Solution structure of thermolysin digested microcin J25 · an experimental structure of the same protein · chain A against B, TM-score 0.14
• 1S7P · Solution structure of thermolysin digested microcin J25 · an experimental structure of the same protein · chain A against B, TM-score 0.14
• 2MMW · LASSO PEPTIDE BASED INTEGRIN INHIBITOR: MICROCIN J25 VARIANT WITH RGD SUBSTITUTION of… · an experimental structure of the same protein · chain A against A, TM-score 0.14
• 2MMW · Lasso peptide based integrin inhibitor: microcin J25 variant with rgd substitution of… · an experimental structure of the same protein · chain A against A, TM-score 0.14
• 1PP5 · Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot · an experimental structure of the same protein · chain A against A, TM-score 0.14
• 1PP5 · Structure of Antibacterial Peptide Microcin J25: a 21-Residue Lariat Protoknot · an experimental structure of the same protein · chain A against A, TM-score 0.14

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q9X2V7
• Elsewhere: UniProt Q9X2V7 · AlphaFold DB Q9X2V7