Research workbench
Solution-state NMR and saxs structural ensemble of npr (1-85) in complex with ein-ntr (170-424)
Analyse Solution-state NMR and saxs structural ensemble of npr (1-85) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5T1O
- Type
- protein
- Length
- 340 residues
- Chains
- 2
- Method
- solution nmr; solution scattering
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphocarrier protein npr; Phosphoenolpyruvate-protein phosphotransferase ptsp
- EC
- 2.7.11.-, 2.7.3.9
- UniProt
- P0A9N2, P37177
- Pockets
- 5 · best druggability 0.77
Structure
solution nmr; solution scattering · 2 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphocarrier protein npr (EC 2.7.11.-) | protein | 85 | 38% helix, 26% strand | P0A9N2 |
| B | Phosphoenolpyruvate-protein phosphotransferase ptsp (EC 2.7.3.9) | protein | 255 | 49% helix, 14% strand | P37177 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.77 | 0.97 | 34 | empty |
| 2 | 202 | 0.57 | 0.80 | 35 | empty |
| 3 | 280 | 0.57 | 0.77 | 30 | empty |
| 4 | 133 | 0.50 | 0.80 | 15 | empty |
| 5 | 95 | 0.42 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 748 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- P37177 · AlphaFold monomer V2.0 prediction for phosphoenolpyruvate-dependent phosphotransferase… · a predicted model of the same protein · chain B against A, TM-score 0.86
- P0A9N2 · AlphaFold monomer V2.0 prediction for phosphocarrier protein npr (P0A9N2) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9N2
- Every structure of UniProt P37177
- Elsewhere: RCSB PDB 5T1O · PDBe 5T1O · UniProt P0A9N2 · UniProt P37177
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