Research workbench
Chromo shadow domain of CBX1 in complex with a histone peptide
Analyse Chromo shadow domain of CBX1 in complex with a histone peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5T1G
- Type
- protein
- Length
- 68 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromobox protein homolog 1; Histone H3.1
- UniProt
- P83916, P68431
- Ligands
- UNX
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromobox protein homolog 1 | protein | 61 | 34% helix, 30% strand | P83916 |
| B | Histone H3.1 | protein | 7 | 0% helix, 29% strand | P68431 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 291 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5T1G · chromo shadow domain of CBX1 in complex with a histone peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P83916 · AlphaFold monomer V2.0 prediction for chromobox protein homolog 1 (P83916) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P83916
- Every structure of UniProt P68431
- Elsewhere: RCSB PDB 5T1G · PDBe 5T1G · UniProt P83916 · UniProt P68431
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.