Research workbench
Protocadherin gamma B2 extracellular cadherin domains 3-6
Analyse Protocadherin gamma B2 extracellular cadherin domains 3-6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5SZR
- Type
- protein
- Length
- 1,261 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q91XX7
- Ligands
- MAN, NAG, FUC, BMA, CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 424 | — | Q91XX7 |
| B | — | protein | 422 | — | Q91XX7 |
| C | — | protein | 415 | — | Q91XX7 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 21 copies · chains A, B, C
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 9 copies · chains A, B, C
- FUC · alpha-L-fucopyranose · sugar · 6 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
- CA · Calcium ion · metal · 27 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5SZR · Protocadherin Gamma B2 extracellular cadherin domains 3-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91XX7
- Elsewhere: RCSB PDB 5SZR · PDBe 5SZR · UniProt Q91XX7
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