Research workbench
Pandda analysis group deposition interleukin-1 beta -- fragment Z2377835233 in complex with interleukin-1 beta
Analyse Pandda analysis group deposition interleukin-1 beta -- fragment Z2377835233 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5R8F
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interleukin-1 beta
- UniProt
- P01584
- Ligands
- K3Y, SO4
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interleukin-1 beta | protein | 152 | 6% helix, 50% strand | P01584 |
Ligands and binding sites
- K3Y · 1-methyl-3-[(3R)-piperidin-3-yl]-1H-pyrazole-4-carboxamide · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5R8F · PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z2377835233 in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P01584 · AlphaFold monomer V2.0 prediction for interleukin-1 beta (P01584) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01584
- Elsewhere: RCSB PDB 5R8F · PDBe 5R8F · UniProt P01584
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