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C-cadherin ectodomain

Analyse C-cadherin ectodomain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1L3W
Type: protein
Length: 540 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ep-cadherin
UniProt: P33148
Ligands: NAG, NDG, CA

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ep-cadherin	protein	540	1% helix, 37% strand	P33148

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 13 copies · chains A
NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · 2 copies · chains A
CA · Calcium ion · metal · 12 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 15 glycan, 2 disulfide (O-glycosylation, N-glycosylation, disulfide).

Compared structures

1L3W · C-cadherin Ectodomain · the same entry in another collection · chain A against A, TM-score 1.00
P33148 · AlphaFold monomer V2.0 prediction for ep-cadherin (P33148) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P33148
Elsewhere: RCSB PDB 1L3W · PDBe 1L3W · UniProt P33148

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