GL1X · GenesisL1 explorer

Research workbench

Pandda analysis group deposition -- crystal structure of BRD1 after initial refinement with no ligand modelled (structure 104)

Analyse Pandda analysis group deposition -- crystal structure of BRD1 after initial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5PRX
Type
protein
Length
244 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
O95696
Ligands
NA

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein121—O95696
B—protein123—O95696

Ligands and binding sites

  • NA · Sodium ion · metal · chains A, B
  • EDO · 1,2-ethanediol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5PRX · PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00
  • O95696 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 1 (O95696) · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.