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Pandda analysis group deposition -- crystal structure of BAZ2B after initial refinement with no ligand modelled (structure 140)

Analyse Pandda analysis group deposition -- crystal structure of BAZ2B after initial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5PFB
Type: protein
Length: 115 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bromodomain adjacent to zinc finger domain protein 2B
UniProt: Q9UIF8
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bromodomain adjacent to zinc finger domain protein 2B	protein	115	57% helix, 0% strand	Q9UIF8

Ligands and binding sites

EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.45	0.81	16	EDO

Compared structures

5PFB · PanDDA analysis group deposition -- Crystal Structure of BAZ2B after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00
Q9UIF8 · AlphaFold monomer V2.0 prediction for bromodomain adjacent to zinc finger domain protein… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UIF8
Elsewhere: RCSB PDB 5PFB · PDBe 5PFB · UniProt Q9UIF8

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