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NMR structure of the complex formed by an engineered region 2 of sigmae in complex with gtaaaa

Analyse NMR structure of the complex formed by an engineered region 2 of sigmae in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5OR5
Type
protein + DNA
Length
101 residues
Chains
2
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Ecf RNA polymerase sigma-E FACTOR,ECF RNA polymerase sigma factor SIGW,ECF RNA polymerase…
UniProt
P0AGB6, Q45585

Structure

solution nmr · 2 distinct chains · 65% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AEcf RNA polymerase sigma-E FACTOR,ECF RNA polymerase sigma factor SIGW,ECF RNA polymerase sigma-E factorprotein9565% helix, 0% strandP0AGB6, Q45585
BDNA (5'-D(*GP*TP*AP*AP*AP*A)-3')dna6——

Interfaces

1 interface between chains.

  • A–B · 636 Ų buried · 8 hydrogen bonds · protein-nucleic

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

  • 5OR5 · NMR structure of the complex formed by an engineered region 2 of sigmaE in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • P0AGB6 · AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma-E factor (P0AGB6) · a predicted model of the same protein · chain A against A, TM-score 0.89
  • Q45585 · AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma factor sigw (Q45585) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

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