MolNFT v1 · #388859 · protein
AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma-E factor (P0AGB6)
P0AGB6: “AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma-E factor (P0AGB6)”. 2 pockets (best druggability 0.65). MolNFT v1 #388859 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0AGB6
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf946795cBBF0d709882f916b7A64276982c26588
- Molecule
- Ecf RNA polymerase sigma-E factor
- UniProt
- P0AGB6
- Pockets
- 2 · best druggability 0.65
Structure
1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ecf RNA polymerase sigma-E factor | protein | 191 | 68% helix, 0% strand | P0AGB6 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 685 | 0.65 | 0.75 | 59 | empty |
| 2 | 52 | 0.29 | 0.76 | 14 | empty |
Compared structures
- 1OR7 · Crystal structure of escherichia COLI sigmae with the cytoplasmic domain of its… · an experimental structure of the same protein · chain A against A, TM-score 0.48
- 1OR7 · Crystal Structure of Escherichia coli sigmaE with the Cytoplasmic Domain of its… · an experimental structure of the same protein · chain A against A, TM-score 0.48
- 5OR5 · NMR structure of the complex formed by an engineered region 2 of sigmaE in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.45
- 5OR5 · NMR structure of the complex formed by an engineered region 2 of sigmae in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.45
- 6JBQ · Cryoem structure of escherichia COLI sigmae transcription initiation complex containing… · an experimental structure of the same protein · chain A against F, TM-score 0.44
- 6JBQ · CryoEM structure of Escherichia coli sigmaE transcription initiation complex containing… · an experimental structure of the same protein · chain A against F, TM-score 0.44
- 2H27 · Crystal structure of escherichia COLI sigmae region 4 bound to its-35 element DNA · an experimental structure of the same protein · chain A against D, TM-score 0.36
- 2H27 · Crystal Structure of Escherichia coli SigmaE Region 4 Bound to its-35 Element DNA · an experimental structure of the same protein · chain A against D, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGB6
- Elsewhere: UniProt P0AGB6 · AlphaFold DB P0AGB6
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