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Co-complex structure of regulator protein 2 (PAMR2) with pamamycin 607 from streptomyces alboniger

Analyse Co-complex structure of regulator protein 2 (PAMR2) with pamamycin 607 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OJY
Type: protein
Length: 222 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tetr family transcription regulator
UniProt: A0A0D3RJT7
Ligands: 9XB
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tetr family transcription regulator	protein	222	73% helix, 0% strand	A0A0D3RJT7

Ligands and binding sites

9XB · Pamamycin 607 · ligand · chains A
GOL · Glycerol · additive · 2 copies · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.38	0.75	15	empty

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

5OJY · Co-complex structure of regulator protein 2 (PamR2) with pamamycin 607 from Streptomyces… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D3RJT7
Elsewhere: RCSB PDB 5OJY · PDBe 5OJY · UniProt A0A0D3RJT7

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