Research workbench

Crystal structure of the chicken MDGA1 ectodomain in complex with the human neuroligin 1 (NL1(-a-B)) cholinesterase domain.

Analyse Crystal structure of the chicken MDGA1 ectodomain in complex with the human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OJ6
Type: protein
Length: 1,236 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8N2Q7, Q0WYX8
Ligands: NAG, BMA

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	547	—	Q8N2Q7
B	—	protein	689	—	Q0WYX8

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains B
BMA · beta-D-mannopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OJ6 · Crystal structure of the chicken MDGA1 ectodomain in complex with the human neuroligin 1… · the same entry in another collection · chain A against A, TM-score 1.00
Q8N2Q7 · AlphaFold monomer V2.0 prediction for neuroligin-1 (Q8N2Q7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Q0WYX8 · AlphaFold monomer V2.0 prediction for mam domain-containing glycosylphosphatidylinositol… · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8N2Q7
Every structure of UniProt Q0WYX8
Elsewhere: RCSB PDB 5OJ6 · PDBe 5OJ6 · UniProt Q8N2Q7 · UniProt Q0WYX8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.