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Globin sensor domain of afgchk (feiii form) in complex with cyanide, partially reduced

Analyse Globin sensor domain of afgchk (feiii form) in complex with cyanide, partially… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OHF
Type: protein
Length: 1,207 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A7HD43
Ligands: HEM, NA, CYN, CL

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, D, E, H	—	protein	152	—	A7HD43
C	—	protein	147	—	A7HD43
F	—	protein	153	—	A7HD43
G	—	protein	147	—	A7HD43

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 8 copies · chains A, B, C, D, E, F, G, H
NA · Sodium ion · metal · chains E
CYN · Cyanide ion · ion · 8 copies · chains A, B, C, D, E, F, G, H
CL · Chloride ion · ion · 5 copies · chains A, B, C, D, F, E, G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OHF · Globin sensor domain of AfGcHK (FeIII form) in complex with cyanide, partially reduced · the same entry in another collection · chain H against H, TM-score 1.00
A7HD43 · AlphaFold monomer V2.0 prediction for globin-coupled histidine kinase (A7HD43) · a predicted model of the same protein · chain E against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7HD43
Elsewhere: RCSB PDB 5OHF · PDBe 5OHF · UniProt A7HD43

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