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Crystal structure of human tRNA-DIHYDROURIDINE(20) synthase dsrbd K419A-K420A mutant

Analyse Crystal structure of human tRNA-DIHYDROURIDINE(20) synthase dsrbd K419A-K420A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5OC5
Type
protein
Length
93 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
TRNA-DIHYDROURIDINE(20) synthase [NAD(P)+]-like
EC
1.3.1.-
UniProt
Q9NX74
Ligands
CL

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 25% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ATRNA-DIHYDROURIDINE(20) synthase [NAD(P)+]-like (EC 1.3.1.-)protein9331% helix, 25% strandQ9NX74

Ligands and binding sites

  • CL · Chloride ion · ion · 2 copies · chains A
  • GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5OC5 · Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD K419A-K420A mutant · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9NX74 · AlphaFold monomer V2.0 prediction for tRNA-DIHYDROURIDINE(20) synthase [NAD(P)+]-like… · a predicted model of the same protein · chain A against A, TM-score 0.95

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