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Covalent inhibitor 4A bound to the lipid pocket of P38ALPHA mutant S251C

Analyse Covalent inhibitor 4A bound to the lipid pocket of P38ALPHA mutant S251C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5O8V
Type: protein
Length: 328 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mitogen-activated protein kinase 14
EC: 2.7.11.24
UniProt: Q16539
Ligands: 9O2
Pockets: 5 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mitogen-activated protein kinase 14 (EC 2.7.11.24)	protein	328	37% helix, 16% strand	Q16539

Ligands and binding sites

9O2 · ~{N}-[3-[7-azanyl-4-(2-phenylethylamino)quinazolin-2-yl]phenyl]propanamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	218	0.72	0.87	25	9O2
2	491	0.69	0.79	47	empty
3	147	0.44	0.75	26	empty
4	88	0.36	0.75	15	empty
5	56	0.32	0.76	13	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5O8V · Covalent Inhibitor 4a bound to the Lipid Pocket of p38alpha Mutant S251C · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q16539
Elsewhere: RCSB PDB 5O8V · PDBe 5O8V · UniProt Q16539

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