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Beta domain of human transcobalamin bound to cobinamide

Analyse Beta domain of human transcobalamin bound to cobinamide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NRP
Type: protein
Length: 106 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P20062
Ligands: CBY, CYN

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	106	—	P20062

Ligands and binding sites

CBY · Cob(ii)inamide · ligand · 2 copies · chains A
CYN · Cyanide ion · ion

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NRP · Beta domain of human transcobalamin bound to cobinamide · the same entry in another collection · chain A against A, TM-score 1.00
P20062 · AlphaFold monomer V2.0 prediction for transcobalamin-2 (P20062) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P20062
Elsewhere: RCSB PDB 5NRP · PDBe 5NRP · UniProt P20062

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