Ligand · CBY
CBY · Cob(ii)inamide
CBY, Cob(ii)inamide (C48 H72 Co N11 O8 +1, 990.1 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…
- Component
- CBY
- Formula
- C48 H72 Co N11 O8 +1
- Class
- ligand
- Structures
- 11
- PDB entries
- 7
Binding sites
CBY in 11 structures; the first of them:
- 5M29 · Structure of cobinamide-bound BtuF, the periplasmic vitamin B12 binding protein in E.coli · CBY A301 · binds SER30, PRO31, ALA32, TYR50, TRP66, GLN67, TRP85, GLY87 and 7 more
- 5M2Q · Structure of cobinamide-bound BtuF mutant W66F, the periplasmic vitamin B12 binding… · CBY A301 · binds SER30, PRO31, ALA32, TYR50, PHE66, GLN67, TRP85, GLY87 and 8 more
- 5M34 · Structure of cobinamide-bound BtuF mutant W66Y, the periplasmic vitamin B12 binding… · CBY A301 · binds SER30, PRO31, ALA32, TYR50, TYR66, TRP85, GLY87, PHE162 and 6 more
- 5M3B · Structure of cobinamide-bound BtuF mutant W66L, the periplasmic vitamin B12 binding… · CBY A302 · binds SER30, PRO31, ALA32, TYR50, LEU66, TRP85, GLY87, PHE162 and 7 more
- 8BN0 · Bacteroides thetaiotaomicron surface protein BT1954 bound to · CBY A403 · binds GLU55, GLY56, ASN57, PHE58, VAL91, GLN93, ASN107, ASN108 and 14 more
- 8PUJ · The surface-exposed lipo-protein of BtuG2 in complex with cyanocobalamin. · CBY A402 · binds GLU30, GLY31, PHE33, VAL66, GLN68, ASN82, ASN83, SER106 and 12 more
- 5M29 · Structure of cobinamide-bound btuf, the periplasmic vitamin B12 binding protein in E.COLI · CBY A301 · binds SER30, PRO31, ALA32, TYR50, TRP66, GLN67, TRP85, GLY87 and 7 more
- 5M2Q · Structure of cobinamide-bound btuf mutant W66F, the periplasmic vitamin B12 binding… · CBY A301 · binds SER30, PRO31, ALA32, TYR50, PHE66, GLN67, TRP85, GLY87 and 8 more
- 5M34 · Structure of cobinamide-bound btuf mutant W66Y, the periplasmic vitamin B12 binding… · CBY A301 · binds SER30, PRO31, ALA32, TYR50, TYR66, TRP85, GLY87, PHE162 and 6 more
- 5M3B · Structure of cobinamide-bound btuf mutant W66L, the periplasmic vitamin B12 binding… · CBY A302 · binds SER30, PRO31, ALA32, TYR50, LEU66, TRP85, GLY87, PHE162 and 6 more
- 5NRP · Beta domain of human transcobalamin bound to cobinamide · CBY A501 · binds LYS342, HIS345, GLU346, THR351, TYR352
Residues it binds most
TRP 19, PHE 19, SER 19, TYR 20, GLN 15, GLU 19, GLY 19, ARG 18, ASP 18, ALA 16 (residue and the binding sites it lines).
Found with
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