Crystal structure of D412N nucleophile mutant CJAGD31B (alpha- transglucosylase from glycoside hydrolase family 31) in complex with alpha cyclophellitol aziridine probe CF021

Structure

x-ray diffraction · 1 distinct chain.

Ligands and binding sites

• 94B · (1~{S},2~{S},3~{S},4~{R},5~{R},6~{S})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol · ligand · chains A
• OXL · Oxalate ion · ligand · chains A
• SO4 · Sulfate ion · ion · 7 copies · chains A
• EDO · 1,2-ethanediol · additive · 6 copies · chains A
• PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5NPD · Crystal Structure of D412N nucleophile mutant cjAgd31B (alpha-transglucosylase from… · the same entry in another collection · chain A against A, TM-score 1.00
• B3PEE6 · AlphaFold monomer V2.0 prediction for oligosaccharide 4-alpha-D- glucosyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt B3PEE6
• Elsewhere: RCSB PDB 5NPD · PDBe 5NPD · UniProt B3PEE6