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Crystal structure of collagen 2A vwc domain

Analyse Crystal structure of collagen 2A vwc domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NIR
Type: protein
Length: 135 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P02458

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	69	—	P02458
B	—	protein	66	—	P02458

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
PEG · Di(hydroxyethyl)ether · additive · 7 copies · chains A, B
PG4 · Tetraethylene glycol · additive · 6 copies · chains A, B
P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NIR · Crystal structure of collagen 2A vWC domain · the same entry in another collection · chain A against A, TM-score 1.00
P02458 · AlphaFold monomer V2.0 prediction for collagen alpha-1(II) chain (P02458) · a predicted model of the same protein · chain B against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02458
Elsewhere: RCSB PDB 5NIR · PDBe 5NIR · UniProt P02458

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