Research workbench
The fimbrial shaft protein MFA1 from porphyromonas gingivalis
Analyse The fimbrial shaft protein MFA1 from porphyromonas gingivalis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NF2
- Type
- protein
- Length
- 485 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Minor fimbrium subunit MFA1
- UniProt
- B2RHG1
- Ligands
- CA
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Minor fimbrium subunit MFA1 | protein | 485 | 13% helix, 32% strand | B2RHG1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.60 | 0.82 | 31 | empty |
| 2 | 187 | 0.48 | 0.75 | 27 | empty |
| 3 | 113 | 0.47 | 0.79 | 21 | empty |
| 4 | 80 | 0.44 | 0.81 | 15 | empty |
| 5 | 90 | 0.43 | 0.79 | 22 | empty |
Compared structures
- 5NF2 · The fimbrial shaft protein Mfa1 from Porphyromonas gingivalis · the same entry in another collection · chain A against A, TM-score 1.00
- B2RHG1 · AlphaFold monomer V2.0 prediction for minor fimbrium subunit MFA1 (B2RHG1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2RHG1
- Elsewhere: RCSB PDB 5NF2 · PDBe 5NF2 · UniProt B2RHG1
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