Research workbench
Crystal structure of chlamydomonas IFT80
Analyse Crystal structure of chlamydomonas IFT80 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5N4A
- Type
- protein
- Length
- 633 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Intraflagellar transport protein 80
- UniProt
- A5Z0S9
- Ligands
- OXL
- Pockets
- 6 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Intraflagellar transport protein 80 | protein | 633 | 11% helix, 46% strand | A5Z0S9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 768 | 0.86 | 0.89 | 85 | empty |
| 2 | 390 | 0.78 | 0.88 | 51 | GOL |
| 3 | 247 | 0.59 | 0.79 | 33 | GOL |
| 4 | 205 | 0.53 | 0.77 | 38 | empty |
| 5 | 102 | 0.41 | 0.76 | 13 | GOL |
Compared structures
- 5N4A · Crystal structure of Chlamydomonas IFT80 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5Z0S9
- Elsewhere: RCSB PDB 5N4A · PDBe 5N4A · UniProt A5Z0S9
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