Research workbench
Crystal structure of the rhesus rotavirus VP4 sialic acid binding domain in complex with 2-O-methyl-alpha-D-N-acetyl neuraminic acid
Analyse Crystal structure of the rhesus rotavirus VP4 sialic acid binding domain in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KQR
- Type
- protein
- Length
- 160 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP4
- UniProt
- P12473
- Ligands
- MNA, SO4
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP4 | protein | 160 | 10% helix, 56% strand | P12473 |
Ligands and binding sites
- MNA · 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1KQR · Crystal Structure of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12473
- Elsewhere: RCSB PDB 1KQR · PDBe 1KQR · UniProt P12473
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.