Research workbench
Glycoside hydrolase BT_0986
Analyse Glycoside hydrolase BT_0986 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MQN
- Type
- protein
- Length
- 1,038 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl hydrolases family 2, sugar binding domain
- UniProt
- A0A0P0FM19
- Ligands
- CA
- Pockets
- 11 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyl hydrolases family 2, sugar binding domain | protein | 1038 | 24% helix, 32% strand | A0A0P0FM19 |
Ligands and binding sites
- CA · Calcium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.79 | 0.85 | 99 | empty |
| 2 | 332 | 0.64 | 0.79 | 38 | CA |
| 3 | 272 | 0.63 | 0.81 | 41 | empty |
| 4 | 302 | 0.58 | 0.77 | 39 | empty |
| 5 | 215 | 0.50 | 0.76 | 42 | empty |
Compared structures
- 5MQN · Glycoside hydrolase BT_0986 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0P0FM19
- Elsewhere: RCSB PDB 5MQN · PDBe 5MQN · UniProt A0A0P0FM19
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.