Research workbench
R. flavefaciens' third scab cohesin in complex with a group 1 dockerin
Analyse R. flavefaciens' third scab cohesin in complex with a group 1 dockerin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5M2S
- Type
- protein
- Length
- 220 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cellulosomal scaffoldin protein; DOC8: type I dockerin repeat domain from family…
- UniProt
- A0AEF3
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative cellulosomal scaffoldin protein | protein | 141 | 4% helix, 53% strand | A0AEF3 |
| B | DOC8: type I dockerin repeat domain from family 9 glycoside hydrolase WP_009982745[RUMINOCOCCUS flavefaciens] | protein | 79 | 42% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1006 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5M2S · R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0AEF3
- Elsewhere: RCSB PDB 5M2S · PDBe 5M2S · UniProt A0AEF3
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