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Crystal structure of intracellular B30.2 domain of BTN3A1 bound to malonate

Analyse Crystal structure of intracellular B30.2 domain of BTN3A1 bound to malonate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5LYG
Type
protein
Length
187 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Butyrophilin subfamily 3 member A1
UniProt
O00481

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AButyrophilin subfamily 3 member A1protein1876% helix, 37% strandO00481

Ligands and binding sites

  • EDO · 1,2-ethanediol · additive · 3 copies · chains A
  • MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5LYG · Crystal structure of intracellular B30.2 domain of BTN3A1 bound to malonate · the same entry in another collection · chain A against A, TM-score 1.00
  • O00481 · AlphaFold monomer V2.0 prediction for butyrophilin subfamily 3 member A1 (O00481) · a predicted model of the same protein · chain A against A, TM-score 1.00

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