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Crystal structure of pyrococcus horikoshii quinolinate synthase (nada) with bound L-malate and FE4S4 cluster
Analyse Crystal structure of pyrococcus horikoshii quinolinate synthase (nada) with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KTT
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Quinolinate synthase a
- EC
- 2.5.1.72
- UniProt
- O57767
- Ligands
- SF4, LMR
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Quinolinate synthase a (EC 2.5.1.72) | protein | 298 | 45% helix, 17% strand | O57767 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- LMR · (2S)-2-hydroxybutanedioic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.73 | 0.95 | 25 | SF4, LMR |
| 2 | 122 | 0.42 | 0.76 | 25 | empty |
Compared structures
- 5KTT · Crystal structure of Pyrococcus horikoshii quinolinate synthase (NadA) with bound… · the same entry in another collection · chain A against A, TM-score 1.00
- O57767 · AlphaFold monomer V2.0 prediction for quinolinate synthase a (O57767) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57767
- Elsewhere: RCSB PDB 5KTT · PDBe 5KTT · UniProt O57767
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